PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00420g00827.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 240aa    MW: 27534.6 Da    PI: 4.087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00420g00827.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.7e-1937127187
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                               f+k+l +sdv++++r+v+pkk ae++  +++ +e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ +Fv+ +gL++gD +
  Peaxi162Scf00420g00827.1  37 FDKQLQNSDVSSLRRIVVPKKAAERYlpNLEIKEGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHGLRQGDYF 120
                               89**************************555557888********9*********888899999999.***************** PP

                               EEEE-SS CS
                        B3  81 vFkldgr 87 
                                ++++++
  Peaxi162Scf00420g00827.1 121 ALHYNDQ 127
                               *998754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.07E-2235124No hitNo description
SuperFamilySSF1019363.14E-2035130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-2435130IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-1637127IPR003340B3 DNA binding domain
PROSITE profilePS508639.37537139IPR003340B3 DNA binding domain
SMARTSM010195.0E-1537139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLSCDHDTAN LILGIYESFN GLFMFQALEP TGFRFLFDKQ LQNSDVSSLR RIVVPKKAAE  60
RYLPNLEIKE GFPITMDDMD GIHVWSFRYR YWPNNSSRMY VLENTGDFVQ THGLRQGDYF  120
ALHYNDQKQI YGIEARKAGN GSVFSGYEAE DMILTDYAQA ADDGNGVLLN EGELDMSNFY  180
FPAMDNEMGM SFIYDTSFWN EPAFDFVGGP MTYYSTNVFP MPSFGSIEDS FSVDDFYDRA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156008e-34AC215600.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0098J01, complete sequence.
GenBankHG9755148e-34HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455551.11e-153PREDICTED: B3 domain-containing transcription factor FUS3-like
TrEMBLK4BDP11e-148K4BDP1_SOLLC; Uncharacterized protein
STRINGSolyc02g094460.1.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-53B3 family protein